Neanderthal DNA Sequence Predictions
Y'know, I was vaguely irritated a while back at the fact that ?off was becoming muppet's personal blog. I mean, if ?off is going to be anyone's personal blog, I thought, why -muppet-? God, why? What could be worse?
With this post, I officially apologize to muppet.
Cheers!
Snark
August 25th, 2005
Oh come on. Would you rather read about sucking other people's blood? Bosses who won't play golf with their blod sucking underlings? And the blood sucker's diet? Or Neanderthal DNA?
Well, I guess the choice is yours.
But if you can tolerate Muppet, there is fuck all you can do about me.
I'm here.
I'm just like muppet except slimmer, smarter and sexier.
With a WAY BIGGER EGO.
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!1
God damn mother fucking chimp sucking absolute dumbass loser fuckwad twit.
Jesus fucking christ go annoy somebody else for a change.
Now way.
I like it here.
Blame Muppet.
I really so wish you'd just find yourself talking to yourself. A simple task for any moderator.
Yes, and the hyper-spatial trans-metamucil topographical mappings of interstital mind-space suggest that the forward-reverse, top-spin, left-chiral morphogenic field is slowing in its angular momentum somewhat. But it could be an inpecunious result of plebicite absorbtion in rubik-space. Either way, it's just hypothetical for now.
Wait, what the fuck am I saying?
I kinda like it. It's like being in a Monty Python skit.
Think, dead 7 dimensional parrot mind ...
Mongo
August 25th, 2005
Aaron. How many thalmocortical layers do you have? A million?
Yeah, a Monty Python skit, but without the point. Or humor.
I couldn't give a rat's ass how many layers there are right now.
I bet you could really use a great algorithm for global optimization of functions. Excellent for high dimensional spaces. I wrote one. Beats the hell out of all others at time of publication.
Really. Like multi-dimential scaling?
It scales extremely well with number of dimensions, far better than a genetic algorithm.
Michael B
August 25th, 2005
http://www.pavis.org/essay/multidimensional_scaling.htmlfrom that article is a good survey of various optimization methods. Deterministic methods get stuck far too often, and scaling of GA's is well established. Simulated annealing is most similar to the method I developed, but converges too slowly. So yes, I did a full literature survey at the time. It's part and parcel of getting a doctorate, you know.
Hey Michael -
Thanks! I had forgotten that article. del.icio.us'd now.
Aaron. There is a specific technical question on the table.
Plan on answering?
I bet you didn't even know about MDS.
>With a WAY BIGGER EGO. With that last post, Chris' ego acquired its own force of gravity, breaking the seal on his Mr BlackHole(TM) waste disposal unit, sucking the rest of the his apartment and lab into nothingness.
Although the Sirius Cybernetics Corporation claimed their Mr BlackHole(TM) line of consumer black holes was avocado in color (and completely safe), Chris was unable to obtain satisfaction with his lawyer (or his dueling keyboards) as the SCC had been first against the wall when the revolution came. Curiously enough, when the New Improved People's SEC starting investigating SCC, they discovered that all the records had been dumped, Enron style, into one of their own black holes. The NIPSEC were never really able to determine if the black holes were indeed avocado, cerulean blue, goth black or stainless as they were somewhat invisible, like those pesky physicists claimed all proper black holes would be. Leaving the tinfoil hat parade to claim that NIPSEC were trying to cover something up. "We don't know what they're hiding, but they're up to something!" claimed the anonymous spokesperson for the TFHP. "And where do you get off asking me for my name? Are *you* one of *them*?"
Peter
August 25th, 2005
Oh man, here I am feeling like a jerk for suggesting that Chris McKinstry could find peace by trepanning himself, just like the guy in that Pi movie does... (slaps forehead) http://groups.google.com/group/sci.math/browse_thread/thread/c725660a8620cd43?hl=en&lr=&ie=UTF-8&rnum=206Christopher McKinstry Oct 21 1994, 3:38 am show options Newsgroups: sci.math From: cmc...@access.mbnet.mb.ca (Christopher McKinstry) - Find messages by this author Date: 21 Oct 1994 05:28:48 GMT Local: Fri, Oct 21 1994 1:28 am Subject: pi record Reply to Author | Forward | Print | Individual Message | Show original | Report Abuse -what's the record for calculating pi? -is there someplace i can get an ascii file with atleast 1million places of pi? -has anyone scanned pi for messages from god? there must be some neat stuff in there if you just look right...
Michael B
August 25th, 2005
Waaaaaaahahahahahaah Such fun ^^
Masiosare
August 25th, 2005
Honestly, no, never heard of MDS. Given what wikipedia tells me, it is itself not an individual algorithm but a class of algorithms, your question is irrelevant. Studying the link I gave you reveals that I did compare my method to the bulk of methods described, and found it superior, which is why I answered as I did.
Unfortunately I don't have my thesis handy, or I'd post its list of references.
You're free to google for my published papers, though. They're on my advisor's website, neatly collected, and almost all references in my thesis are contained in those papers.
So. Again. Aaron. How did your program work?
And how it is better than GAs [which are an open class - new ones are being invented everyday - which is why I objected and still object to your boast].
Feel free to object. Given that it was better at the time, and I haven't touched since I graduated, I should hope that someone else has improved on it by now.
Oh yeah...how did it work?
Been waiting for that.
Go fuck yourself.
Read the damn papers, asshole.
Hey Chris, no matter what everyone else says, it's cool you heard from the guy. Can you tell him something for me? Tell him I like his new show where he plays a lawyer, and I'm glad to see he's not wearing those white jackets over t-shirts any more.
And how's Philip Michael Thomas?
Philo
Philo
August 25th, 2005
Hey, relax I am reading the papers. You posted while I was writing.
So, a couple of questions. What is to stop a GA from discovering your method? And if you know how to throw around random probes in a phase space why on earth are you giving me so much heat about my work that models the brain as a 7d phase space? My Mindpixel corpus is actually nearly 2 million random probes of human semantic phase space.
You'd think a guy who's juggling all that stuff would notice a broken image link on his site. Or, if it really worked, it would TELL him there's a broken image on his site.
Philo
Philo
August 25th, 2005
Ask your 7th-dimensional psychic hotline.
Philo
Philo
August 25th, 2005
Ah. More brilliance. You're going to start licking other people's blood off your desk and start complaining no one will intite you to play a game you don't know how to play any second now.
Is your head starting to take on a felt-like texture? If so, I'd see a doctor immediately! And go on a diet.
"I'm just like muppet except slimmer, smarter and sexier." I'm sad to say that the two of you could, at a quick glance, have been seperated at birth. For visual confirmation, I've hosted his disturbing video here: http://dashslot.co.uk/media/mupparody_recode.mpgI just wish I was here earlier, but someone beat me to the obvious Miami Vice jokes. In the spirit of providing information, though, Philip Micheal Thomas was pimping some kind of lame psychic hotline a 5-odd years ago. Where he is now I couldn't say, but "near the bottom of the pile" is probably a reasonable estimate...
GA's don't create new methods unless you're doing some sort of dynamically-self-recoding optimization algorithm. They don't search algorithm space, they search phase space.
Which, actually, I did experiment with a little bit, in adjusting parameters for my method.
It's not your 7 dimensional space I object to, though I do think that's pretty absurd.
My point is that you're exactly as special as the next Fight Club snowflake in the room. I've met Dudley Herschbach, Ralph Merkle, and Eric Drexler. I have 3 published papers. I have created something that if people used it rather than older slower tech, their stuff would be vastly more efficient. (Sounds familiar? Like you a bit?) And yet, I'm no more amazing than anyone else here.
You're in a room full of really smart people. Many have done some really cool stuff. So give the messiah complex a rest.
Hey, Aaron that's cool. And it is wonderful I provoked you to talk about it. I wish more people would just talk about what they have done.
As for GAs...there is no rule to say you can't nest them - GA's looking for GA's...GA's in general, can do anything that can be done.
Of course they can do a lot, but so can other optimization methods.
Mine, of course, would do it better.
;)
"And yet, I'm no more amazing than anyone else here."
damn. you are *definitely* more amazing than me. so cool, Ive always wanted to study that stuff.
bastard.
Jesus H Christ
August 25th, 2005
Here's why I went to grad school: Molecular nanotechnology. I heard of it around '90 and decided it was so incredibly cool I just had to try to get into it. I got my shit together, worked about 66 hours a week for 9 months straight to pay bills enough to go back and finish my Bachelor's. Then I applied to grad school. Purdue said "We'd like to take you, but we're out of money this year, so please reactivate your application next year." So I did. Drove there to visit a friend once, personally stopped by the chemistry department to check on the status of my application, and they took it out of a filing cabinet and put it on top of a pile. Next thing I know, I'm in grad school, summer of '94. Then it's just stay in classes and stubborn it out until I decide I am done, write everything up and leave with my PhD.
And then fail to find a job.
That's the fun part. Oh, there's stuff in the middle, like how partway through the program the head of the department informed me I was getting a degree in chemistry, not nanotechnology, where did I get the idea I could do that - despite the fact that he was the very person who had told me I could when I entered two years before. Or how I got blown off at a (nanotech) conference when I told people I was a grad student interested in studying nanotech, despite the fact that grad students are kind of necessary for a field to grow. Or how people couldn't handle the idea of machine phase chemistry. Or how one professor laughed at it, and now has published a book on it, pulling a complete 180.
Bitter? Me?
Never.
wow, what a whinging bastard :)
...nice to know that if I had chosen a different life path I would probably still be equally bitter about the way things turned out...
Jesus H Christ
August 25th, 2005
That was great Aaron. Really. Your method may in fact be better than every known GA in some domain.
But say a GA managed to discover say, a tunable fractal version of your random probe? And then suppose that the attractors in the phase space you are trying to map are also fractal?
I say I just discover it?
Yeah, I usually don't talk about it. I guess I decided that the degree was where I'd stop, and then went no further. I probably should have stubborned it through to the point of getting a job in the field, but that's the past.
Time to move along to the next thing, eh?
Chris -
A GA might discover that, but you seem to have missed what I said. If you can construct a method of searching algorithm space with a GA, you can also search that space with my method.
I actually *did* do this to a limited extent. Because the earliest implementations of it required some arbitrary parameters to be set, rather than just guess, I nested it inside itself and ran the outer optimization loop until the parameter in question stabilized.
If a GA can discover my method and improve on it, great, so be it. But my method could do the same thing. A GA varies elements by mutation and point swapping a given vector within a population, among other operators. My method is similar. It is in some ways a mix of GA and simulated annealing.
I understand how useful fractals are. Non-integer dimensions used to be extremely interesting to me, particularly in conjuction with nanotechnology, but that's beside the point.
> there is fuck all you can do about me
You know, some people might take that as a challenge.
August 26th, 2005
> I got blown off at a (nanotech) conference
That stripper again?
August 26th, 2005
"I understand how useful fractals are."
oooo.... shiny....
Philo
August 26th, 2005
Yeah, fractals tend to be nice shiny objects, but from time to time they come in handy.
Aaron, Sabre Kais did all the work and you fucking know it!
stop the lies for once!!!
August 26th, 2005
Hey Aaron...I am super interested in this topic. I will come back here and pick it up as soon as I can. I have a pile of work today.
Lol.
Sabre didn't look at my source code even once, not even in my thesis. Now, Pablo Serra did a respectable portion of the work on two of those three papers, and he's simply amazing, but my advisor? No, he didn't really do much on those.
Sabre's blindingly intelligent. I wish I had been involved with some of the work they did mapping quantum mechanics to thermodynamics, but I was otherwise occupied at the time.
Incidentally, in most of the academic world that I've seen, last name on a paper generally means the person running the research group, or if more than one group is involved, it's the most senior person, usually by tenure. I believe we followed that convention in our papers.
Chris -
I knew you would be interested, which is why I baited you with it.
As long as you remain not so much of a pompous ass, we'll get along just fine.
muppet, darling, I know you're excited to the point of ejaculation by all this, but could you save a little for me?
So, Aaron, when this McKinstry guy can go to the library, grab a book on [really complicated subject], read it, do some Google, proclaim himself an expert, and troll-market himself by babbling the shit out of the subject so that anyone without a basic introduction thinks he must be a genius and respects him as some kind of scientist, it must make your fuckin' blood boil because it looks like you did actual real work whereas he just read half of the wikipedia article on nanotechnology.
Need a hug?
Michael B
August 26th, 2005
*snicker*
You're not far off the mark, actually. Snake oil salesmen piss me off.
No hug required. Thanks, though.
Ok. New week.
Back to phase space and fractal sampling thereof...
And my question is, what do you find silly about modeling immediate memory as a fratal pattern of activation on the surface of a seven-sphere?
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